COSYS – open computational platform for Systems Biology

Provided by SYSBIO – Centre of Systems Biology

SYSBIO

COSYS is an open computational platform designed for the Systems Biology community. Designed to help life scientists to easily access basilar systems biology tools, it can be also used with effectiveness by skilled systems biologists. Cooperation-driven and user-friendly, COSYS is a unified tool for biological modeling (mechanistic and constraint-based), simulation and analysis, providing users with the cutting edge of GPU-powered computation. COSYS is free of charge, and can be used by everyone.

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Bioinformatics supporting analysis, integration and interpretation of large scale genomics datasets

Provided by CCRI (Children's Cancer Research Institute)

ZANDR

* Bioinformatics: The bioinformatics team provides advice and support for CCRI researchers with regard to analysis, integration and interpretation of large scale genomics datasets. We maintain and run computational pipelines for processing raw next-generation sequencing (NGS) data and data quality checks for all genomics data held within the CCRI/St.Anna Children´s Hospital. We are also performing high quality data analyses in close collaboration with CCRI/St.Anna Children´s Hospital researchers.

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Zebrafish platform for preclinical drug screening

Provided by CCRI (Children's Cancer Research Institute)

ZANDR

* Zebrafish platform Austria for Preclinical drug Screening (ZANDR) is a unique platform to phenotypically screen small compounds on zebrafish models of human diseases.
Zebrafish and in particular zebrafish larvae is a well suited vertebrate model system to investigate various human diseases and to perform cost-effective screens for small molecules with therapeutic potential (1). Funded by FFG, we have established a zebrafish-optimized and automated screening platform, which is open to the scientific community. Please contact us, if you are interested in collaboration: www.zandr-ccri.at

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Cellosaurus Cell line encyclopedia

Provided by Cellosaurus

Cellosaurus

The Cellosaurus is a knowledge resource on cell lines. It attempts to describe all cell lines used in biomedical research, including:
Immortalized cell lines
Naturally immortal cell lines (example: stem cell lines)
Finite life cell lines when those are distributed and used widely
Vertebrate cell line with an emphasis on human, mouse and rat cell lines
Invertebrate (insects and ticks) cell lines

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Global registry for human pluripotent stem cell lines

Provided by Human Pluripotent Stem Cell Registry (hPSCreg)

HPSCREG

Benefits of the global registry for human pluripotent stem cell lines hPSCreg are
– increased visibility of your hPSC line within the regenerative medicine community worldwide
– assignment of a unique cell line reference code to allow traceability in published papers and across federated on-line resources
– obtain hPSC certificates to fulfill ethical provenance requirements for EC-funded research projects
– recognition of source biomaterial ethical provenance and other cell line characteristics

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Secure data sharing repository for rare disorders

Provided by PhenomeCentral

PhenomeCentral is a repository for secure data sharing targeted at clinicians and scientists working in the rare disorder community. We encourage global scientific collaboration while respecting the privacy of patients profiled in this centralized database. PhenomeCentral uses state-of-the-art algorithms to match cases on phenotype and genotype. You can find similar cases even if there are no phenotypes in common, because terms are matched semantically rather than using textual similarity. You can enter candidate genes or let the Exomiser automatically prioritize genes from exome sequencing data.

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In silico models software

Provided by Auckland Bioengineering Institute

The purpose of CellML is to store and exchange computer-based mathematical models. CellML allows scientists to share models even if they are using different modelling tools. It also enables them to reuse components from one model in another, thus accelerating model development

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